Index

A

align_object_props() (in module fusion_tools.utils.shapes), [1]

aperio_to_geojson() (in module fusion_tools.utils.shapes) asyncio_db_loop() (in module fusion_tools)

C

ClassificationDataset (class in fusion_tools.dataset)

D

detect_geojson() (in module fusion_tools.utils.shapes), [1]

detect_histomics() (in module fusion_tools.utils.shapes), [1] detect_image_overlay() (in module fusion_tools.utils.shapes), [1]

E

export_annotations() (in module fusion_tools.utils.shapes), [1] export_configs() (fusion_tools.dataset.ClassificationDataset method) (fusion_tools.dataset.SegmentationDataset method)

extract_geojson_properties() (in module fusion_tools.utils.shapes), [1] extract_listed_prop() (in module fusion_tools.utils.shapes) extract_nested_prop() (in module fusion_tools.utils.shapes), [1]

F

find_intersecting() (in module fusion_tools.utils.shapes), [1] find_nested_levels() (in module fusion_tools.utils.shapes), [1] find_tissue() (fusion_tools.dataset.FUSIONDataset method) (fusion_tools.dataset.SegmentationDataset method) fusion_tools module fusion_tools.dataset module, [1]

fusion_tools.handler module fusion_tools.utils module fusion_tools.utils.omics module fusion_tools.utils.shapes module, [1] FUSIONDataset (class in fusion_tools.dataset)

G

gen_slide_patches() (fusion_tools.dataset.ClassificationDataset method) (fusion_tools.dataset.FUSIONDataset method) (fusion_tools.dataset.SegmentationDataset method) geojson_to_histomics() (in module fusion_tools.utils.shapes) get_asct() (in module fusion_tools.utils.omics)

get_cell() (in module fusion_tools.utils.omics) get_gene_info() (in module fusion_tools.utils.omics) get_next_image() (fusion_tools.dataset.ClassificationDataset method) (fusion_tools.dataset.SegmentationDataset method) group_subtypes() (in module fusion_tools.utils.omics)

H

histomics_to_geojson() (in module fusion_tools.utils.shapes)

I

indices_to_path() (in module fusion_tools.utils.shapes), [1]

L

load_annotations() (in module fusion_tools.utils.shapes) load_aperio() (in module fusion_tools.utils.shapes), [1] load_geojson() (in module fusion_tools.utils.shapes), [1] load_histomics() (in module fusion_tools.utils.shapes), [1]

load_label_mask() (in module fusion_tools.utils.shapes) load_parquet() (in module fusion_tools.utils.shapes) load_polygon_csv() (in module fusion_tools.utils.shapes), [1] load_visium() (in module fusion_tools.utils.shapes), [1] load_visiumhd() (in module fusion_tools.utils.shapes), [1]

M

make_image_and_label() (fusion_tools.dataset.ClassificationDataset method) make_image_and_mask() (fusion_tools.dataset.SegmentationDataset method) make_patch() (fusion_tools.dataset.ClassificationDataset method) (fusion_tools.dataset.SegmentationDataset method) merge_dict() (in module fusion_tools.utils.shapes) module fusion_tools fusion_tools.dataset, [1] fusion_tools.handler fusion_tools.utils fusion_tools.utils.omics fusion_tools.utils.shapes, [1]

P

path_to_indices() (in module fusion_tools.utils.shapes), [1] path_to_mask() (in module fusion_tools.utils.shapes), [1] plant_seed() (fusion_tools.dataset.ClassificationDataset method) (fusion_tools.dataset.FUSIONDataset method) (fusion_tools.dataset.SegmentationDataset method)

process_annotations() (fusion_tools.dataset.ClassificationDataset method) (fusion_tools.dataset.FUSIONDataset method) (fusion_tools.dataset.SegmentationDataset method) process_filters_queries() (in module fusion_tools.utils.shapes), [1]

S

SegmentationDataset (class in fusion_tools.dataset) selective_aggregation() (in module fusion_tools.utils.omics)

spatially_aggregate() (in module fusion_tools.utils.shapes), [1] structures_within_poly() (in module fusion_tools.utils.shapes)